Open kako-f opened 6 months ago
Hi!, sorry if this is kind obvious but I'm having a hard time understanding how to create a customized universe model.
According to the readme.
A script with some utility functions is available to help you build your own templates. For instructions please check: build_universe -h
But it's kind lacking on the help.
I understand that it's necessary to provide a reaction database, do i need to manually create one? in sbml format?
the curate_universe script accepts a SBML formatted file, but it fails because of size limits
cplex.exceptions.errors.CplexSolverError: CPLEX Error 1016: Community Edition. Problem size limits exceeded. Purchase at https://ibm.co/2s0wqSa.
and I'm not seeing a "--solver" option available.
I'm kind lost, any help would be appreciated.
Thanks!
Hi!, sorry if this is kind obvious but I'm having a hard time understanding how to create a customized universe model.
According to the readme.
But it's kind lacking on the help.
I understand that it's necessary to provide a reaction database, do i need to manually create one? in sbml format?
the curate_universe script accepts a SBML formatted file, but it fails because of size limits
and I'm not seeing a "--solver" option available.
I'm kind lost, any help would be appreciated.
Thanks!