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cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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How to include new single species metabolic model in the model database #200

Closed Mushahid2521 closed 1 month ago

Mushahid2521 commented 1 month ago

Hi, I hope you are doing great. I was doing metabolic modeling of a list of species using [carveme_refseq84_species.qza](https://zenodo.org/records/3755182/files/carveme_refseq84_species.qza?download=1) dataset. Few of my species are missing in the database. I have generated metabolic models for the absent species and now I was wondering how I should incorporate this in the carveme_refseq84_species.qza dataset. I am using Micom for community modeling which uses this carveme_refseq84_species.qza database. Carveme produces the models in .xml file, however inside the carveme_refseq84_species.qza database I find all the models in .json format. Will you please help me achieve this?

Thank you.

cdanielmachado commented 1 month ago

Hi,

This is a supplementary file of MICOM, not CarveMe... I suppose you need to ask the author of MICOM to make that change.