I've installed CPLEX, CPLEX python api, and diamond.
I've then installed carveme using pip.
When running carveme on a single genome I get the following error:
Traceback (most recent call last):
File "/home/adilavy/.linuxbrew/bin/carve", line 4, in <module>
from carveme import config, project_dir
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/carveme/__init__.py", line 5, in <module>
from framed import set_default_solver, set_default_parameter, Parameter
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/framed/__init__.py", line 6, in <module>
from .cobra.phaseplane import PhPP
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/framed/cobra/phaseplane.py", line 16, in <module>
import matplotlib.pyplot as plt
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/matplotlib/pyplot.py", line 115, in <module>
_backend_mod, new_figure_manager, draw_if_interactive, _show = pylab_setup()
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/matplotlib/backends/__init__.py", line 62, in pylab_setup
[backend_name], 0)
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/matplotlib/backends/backend_tkagg.py", line 4, in <module>
from . import tkagg # Paint image to Tk photo blitter extension.
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/matplotlib/backends/tkagg.py", line 5, in <module>
from six.moves import tkinter as Tk
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/six.py", line 203, in load_module
mod = mod._resolve()
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/six.py", line 115, in _resolve
return _import_module(self.mod)
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/site-packages/six.py", line 82, in _import_module
__import__(name)
File "/home/adilavy/.linuxbrew/Cellar/python@2/2.7.15_1/lib/python2.7/lib-tk/Tkinter.py", line 39, in <module>
import _tkinter # If this fails your Python may not be configured for Tk
ImportError: No module named _tkinter
I've installed CPLEX, CPLEX python api, and diamond. I've then installed carveme using pip.
When running carveme on a single genome I get the following error: