Incorrect filepaths in carveme_init

cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction

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Incorrect filepaths in carveme_init #52

Closed aruginkgo closed 5 years ago

aruginkgo commented 5 years ago

Running carveme_init (after getting the "Database was built with a different version of Diamond" error) gave the following error:

Downloading data/input/refseq_release_84.tsv.gz
Traceback (most recent call last):
...
urllib.error.HTTPError: HTTP Error 404: Not Found

This was fixed after manually updating the paths in carveme_init to data/input/refseq_release_92.tsv.gz and data/input/genbank_release_230.tsv.gz. Carveme was installed using pip3.

cdanielmachado commented 5 years ago

Sorry, I made an update on github and the links in the pip installer became outdated. I will update the pip installer as well. Thanks for spotting the problem!

cdanielmachado commented 5 years ago

Solved :)