GPR rule and COBRATOOLBOX

[SPD20]

Hi,

I tried running Carveme model with Cobratoolbox..although it run perectly but the GRP rule tabs are not read correctly..so other tools which required GPR RULES are failing in cobratoolbox. I tried --fbc2 option, cobra option as well...nothing seems to work in this case.

Can you please suggests something? This is how GPR RULE are displayed when I load carveme model.

'' 'x(89)' '( x(90) | x(91) )' '( x(90) | x(91) )' '( x(90) | x(91) )' '( x(90) | x(91) )' '( x(90) | x(91) )' '( x(90) | x(91) )' '( x(90) | x(91) )' '' 'x(92)' '' 'x(93)'

Thanks,

[cdanielmachado]

Could you be more specific regarding the meaning of "not read correctly" ?

From the output you pasted it seems that the cobratoolbox was able to load the gprs.

[SPD20]

Hello Daniel,

Thanks for your reply. I will try to run the same command which gave me error and post it back to you.

Kind regards,

From: Daniel Machado notifications@github.com Sent: 28 February 2020 14:33 To: cdanielmachado/carveme carveme@noreply.github.com Cc: Dahale, Sonal (PG/R - Sch of Biosci & Med) sonal.dahale@surrey.ac.uk; Author author@noreply.github.com Subject: Re: [cdanielmachado/carveme] GPR rule and COBRATOOLBOX (#65)

Could you be more specific regarding the meaning of "not read correctly" ?

From the output you pasted it seems that the cobratoolbox was able to load the gprs.

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[SPD20]

Hi Daniel,

Please accept my apology I missed running some preprocessing commands and hence the error.

Closing the issue.

thanks

[jiuchuyuan]

Hi, Could you tell me how you solved this problem? I ran into the same problem. thanks