cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction
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SyntaxError: invalid syntax #71

Closed SPD20 closed 4 years ago

SPD20 commented 4 years ago

Hi Daniel,

Recently I am getting this error.. all the packages are same in my env, using which it ran smoothly in past

Traceback (most recent call last): File "C:\Users**\AppData\Local\Continnum_2\anaconda3\Scripts\carve", line 4, in from carveme import config, project_dir File "C:\Users***\AppData\Local\Continuum\anaconda3\lib\site-packages\carveme__init.py", line 5, in from framed import set_default_solver, set_default_parameter, Parameter File "C:\Users**\AppData\Local\Continuum\anaconda3\lib\site-packages\framed__init__.py", line 14, in from .io.sbml import load_sbml_model, load_cbmodel, load_odemodel, save_cbmodel, save_sbml_model File "C:\Users**\AppData\Local\Continuum\anaconda3\lib\site-packages\framed\io\sbml.py", line 21, in from libsbml import SBMLReader, SBMLWriter, SBMLDocument, XMLNode, AssignmentRule, parseL3FormulaWithModel, FbcExtension File "C:\Users****\AppData\Local\Continuum\anaconda3\lib\site-packages\libsbml\init__.py", line 3060 class SBase(_object, metaclass=AutoProperty): ^ SyntaxError: invalid syntax list.txt

Thanks in advance.

cdanielmachado commented 4 years ago

This seems to be a problem with libsbml, not CarveMe. Can you import libsbml if you open a python terminal ?

SPD20 commented 4 years ago

Thanks Daniel. I will import libsbml.