the use of thermodynamics.py file

cdanielmachado / carveme

CarveMe: genome-scale metabolic model reconstruction

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the use of thermodynamics.py file #77

Closed yut8920 closed 4 years ago

yut8920 commented 4 years ago

Hi,

I want to use the thermodynamics.py file to convert reaction from BiGG to KEGG and calculate thermodynamic information,but I don't know the form of kegg_compounds list.Could you please supply a demo to help us learn how to use the code?

Thank you!

cdanielmachado commented 4 years ago

Hi,

It comes from this file: https://github.com/cdanielmachado/carveme/blob/master/carveme/data/input/equilibrator_compounds.tsv.gz

Best regards, Daniel