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cdanielmachado / kefir_paper

Supplementary Material for Blasche et al
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How to define and construct a custom culture medium component that can be recognized by CarveMe? #2

Open microbial-cookie opened 9 months ago

microbial-cookie commented 9 months ago

Hello, I've read your articles on the kefir microbial community, and I would like to inquire about how to define my own culture medium for simulating the genome metabolism of a single strain. I've reviewed your definitions of culture medium composition, including some complex substances. I'm curious about how you generate corresponding abbreviated names recognized by CarveMe.

I've recently been using CarveMe to construct genome-scale metabolic models. However, the culture medium I'm using contains an uncommon compound, namely, Bis(2-ethylhexyl) phthalate (C24H38O4). It is the sole carbon source in my medium, and I'm interested in building a culture medium component that includes it. I would like to ask how you achieve this. Thank you very much, and I look forward to your reply.

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franciscozorrilla commented 1 week ago

This is a duplicated question and has been asnwered here: https://github.com/franciscozorrilla/metaGEM/issues/144