Identifying minimal medium composition in detailed interactions

[franciscozorrilla]

Hi Daniel,

I have a 4 species community for which I calculated 100 detailed interaction simulations using the --molweight flag. Now I am interested in getting an idea of the minimal media compostion used in detailed interactions, does it make sense to run a number of global simulations with the --debug flag and extract the media composition in the row associated with the MRO of the community?

community   medium  key1    key2    data
all complete    mip ni  ca2,cl,cobalt2,cu2,fe3,gam,k,mg2,mn2,nac,no,o2,pi,pnto__R,ribflv,so4,thm,val__L,zn2
all complete    mip i   ca2,cl,cobalt2,cu2,fe3,gam,k,mg2,mn2,nac,o2,pi,pnto__R,ribflv,so4,thm,zn2
all complete    mro community   ca2,cl,cobalt2,cu2,fe3,gam,k,mg2,mn2,nac,o2,pi,pnto__R,ribflv,so4,thm,zn2
all complete    mro CHCC10675   ca2,cl,cobalt2,cu2,fe3,glyc,k,mg2,mn2,nh4,pi,so4,thm,val__L,zn2
all complete    mro CHCC4895    ca2,cl,cobalt2,cu2,fe3,gam,k,mg2,mn2,nac,pi,pnto__R,ribflv,so4,thm,zn2
all complete    mro CHCC5614    ca2,cl,cobalt2,cu2,fe3,fol,gam,k,mg2,mn2,o2,pi,ribflv,so4,thm,val__L,zn2
all complete    mro CHCC6086    ca2,cl,cobalt2,cu2,fe2,gly,h,k,mg2,mn2,o2,pi,so4,thm,val__L,zn2

Thanks and best wishes, Francisco

[cdanielmachado]

Hi Francisco,

Yes, I think that makes sense. Either mro/community or mip/i (interacting), in principle should be the same.

Best regards, Daniel