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cdanielmachado / smetana

SMETANA: a tool to analyse interactions in microbial communities
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Got an empty file with only the header #33

Open zoelwl opened 2 years ago

zoelwl commented 2 years ago

Hi, I used smetana to build an interactive feeding model of a community of 108 strains of bacteria, using the code below: smetana *.xml -d -o model -m M9[-O2] --mediadb media_db.tsv But i got an empty file with only the header. model_detailed.xls So I want to ask what went wrong in the middle? Is it that you replied to someone else's question: Is it necessary for a single strain to survive under a given medium to simulate the interaction feeding of the flora? Look forward to hearing from you. Thank you!

wupeng1998 commented 1 year ago

Hello did you get your problem solved? I have built a colony model using macrogenomes via carvene, but using smetana to simulate colony interactions found null results.

zoelwl commented 1 year ago

Maybe you can change your medium component.

wupeng1998 commented 1 year ago

ok, i will try