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cdanielmachado / smetana

SMETANA: a tool to analyse interactions in microbial communities
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issues when add -c communities #37

Closed qikongwanli closed 1 year ago

qikongwanli commented 1 year ago

$ smetana *.xml -c community.txt Traceback (most recent call last): File "/home/qing/miniconda3/envs/metaGEM/bin/smetana", line 106, in ignore_coupling=args.no_coupling, File "/home/qing/miniconda3/envs/metaGEM/lib/python3.6/site-packages/smetana/interface.py", line 333, in main comm_models = [model_cache.get_model(org_id, reset_id=True) for org_id in organisms] File "/home/qing/miniconda3/envs/metaGEM/lib/python3.6/site-packages/smetana/interface.py", line 333, in comm_models = [model_cache.get_model(org_id, reset_id=True) for org_id in organisms] File "/home/qing/miniconda3/envs/metaGEM/lib/python3.6/site-packages/reframed/io/cache.py", line 26, in get_model raise RuntimeError("Model not in list: " + model_id) RuntimeError: Model not in list: B51_0_22bin_38_fa

my model list

B51_0_22bin_14_fa.xml B51_0_22bin_29_fa.xml B51_0_22bin_38_fa.xml B51_0_22bin_60_fa.xml

commutities

community1 B51_0_22bin_14_fa community1 B51_0_22bin_29_fa community2 B51_0_22bin_38_fa community2 B51_0_22bin_60_fa community2 B51_0_22bin_29_fa

cdanielmachado commented 1 year ago

That's strange, everything seems to be correct. Are the models in the same folder where you are executing this command? What is the output of ls *.xml ?

qikongwanli commented 1 year ago

That's strange, everything seems to be correct. Are the models in the same folder where you are executing this command? What is the output of ls *.xml ?

Hi Daniel, I am sure that all the models are in the same folder.