cdd / bioassay-template

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CLO import: bring in alternate labels #111

Open aclarkxyz opened 5 years ago

aclarkxyz commented 5 years ago

Currently we import CLO by converting the giant OWL file to a reduced TTL branch. In the original, there are a number of <obo:IAO_0000118> cases, which we normally treat as alternate labels. These should be imported as well... update the ImportCellLineOntology.java file to do this.

Once this is done, look into extending the CellLineFix.java matching to consider the alternate labels, and see if we can link up more cell lines to BRENDA.