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cdd / bioassay-template

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Template compilation outputs stats #117

Closed aclarkxyz closed 5 years ago

aclarkxyz commented 5 years ago

When compiling templates, output shows a preview of the template content and how many terms each one gets, e.g.

Compiling schema files:
    data/template/schema.json
    data/template/branch/measurement_details.json
Output to:
    data/template/vocab.dump
Loading ontologies ..................................
Loaded: 109841 terms.
Schema [common assay template] <http://www.bioassayontology.org/bas#>
    [assay title] <bao:BAO_0002853> terms=0
    [bioassay type] <bao:BAO_0002854> terms=13
    [bioassay] <bao:BAO_0002855> terms=155
    [assay format] <bao:BAO_0000205> terms=32
    [assay design method] <bao:BAO_0095009> terms=117
    [assay supporting method] <bao:BAO_0095010> terms=231
    [assay cell line] <bao:BAO_0002800> terms=41631
    [organism] <bao:BAO_0002921> terms=99
    [biological process] <bao:BAO_0002009> terms=38247
    [target] <bao:BAO_0000211> terms=5057
    [applies to disease] <bao:BAO_0002848> terms=4072
    [assay mode of action] <bao:BAO_0000196> terms=51
    [result] <bao:BAO_0000208> terms=179
    [screening campaign stage] <bao:BAO_0000210> terms=33
    [assay footprint] <bao:BAO_0002867> terms=45
    [assay kit] <bao:BAO_0002663> terms=141
    [physical detection method] <bao:BAO_0000207> terms=79
    [detection instrument] <bao:BAO_0002865> terms=146
    [perturbagen type] <bao:BAO_0000185> terms=31
    [protein identity] <bao:BAX_0000012> terms=8348
    [gene identity] <bao:BAX_0000011> terms=853
    [GO terms] <bao:BAO_0003107> terms=42122
    [assay sources] <bao:BAO_0002852> terms=106
    [related assays] <bao:BAO_0000539> terms=0
    {measurement} <bao:BAX_0000017>
        [field] <bao:BAX_0000015> terms=0
        [units] <bao:BAO_0002874> terms=330
        [operator] <bao:BAX_0000016> terms=6
        [threshold] <bao:BAO_0002916> terms=0
Schema [measurement details] <http://www.bioassayontology.org/bas/MeasurementDetails#>
    {measurement details} <bao:BAO_0000209>
        [signal direction] <bao:BAO_0002857> terms=7
        [excitation wavelength] <bao:BAO_0002917> terms=0
        [emission wavelength] <bao:BAO_0002918> terms=0
        [absorbance wavelength] <bao:BAO_0002919> terms=0
        [detection instrument manufacturer] <bao:BAO_0000737> terms=58
        [assay readout type] <bao:BAO_0002856> terms=9
        [assay readout parameter] <bao:BAX_0000052> terms=5
        [endpoint modifier] <bao:BAO_0002858> terms=7
        [detected entity] <bao:BAO_0002797> terms=362
        [measurement quality] <bao:BAO_0002662> terms=39
        [location of measurement] <bao:BAO_0002861> terms=3875
Done.