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Bao update #130

Closed handemcginty closed 4 years ago

handemcginty commented 4 years ago

BAO 2.5.1 is updated and new vocab.dump created.

aclarkxyz commented 4 years ago

For the record, this is the delta between old & new vocab:

Differences between vocab dumps...
    OLD:/tmp/vocab.dump
    NEW:data/template/vocab.dump
Term counts: [111436] -> [111527]
Prefixes: [20] -> [20]
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002853
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002854
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002855
    terms removed: 0
    terms added: 6
        <http://www.bioassayontology.org/bao#BAO_0010067> Protein-Protein NanoBRET Assay
        <http://www.bioassayontology.org/bao#BAO_0010068> Protein-Small Molecule NanoBRET Assay
        <http://www.bioassayontology.org/bao#BAO_0010069> Kinase NanoBRET Assay
        <http://www.bioassayontology.org/bao#BAO_0010070> Tandem Mass Tag (TMT) MS Protein Quantification
        <http://www.bioassayontology.org/bao#BAO_0010071> Liquid Chromatography/Mass Spectroscopy (LC/MS) protein quantification
        <http://www.bioassayontology.org/bao#BAO_0080034> beta-arrestin clustering assay
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000205
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0095009
    terms removed: 1
        <http://purl.obolibrary.org/obo/ERO_0002177> stable isotope labeling by amino acids in cell culture
    terms added: 4
        <http://purl.obolibrary.org/obo/ERO_0001500> liquid chromatography 
        <http://purl.obolibrary.org/obo/ERO_0002176> isobaric labeling
        <http://www.bioassayontology.org/bao#BAO_0040031> size separation method
        <http://www.bioassayontology.org/bao#BAO_0040032> NanoBRET
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0095010
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002800
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002921
    terms removed: 11
        <http://purl.obolibrary.org/obo/NCBITaxon_10029> Cricetulus griseus
        <http://purl.obolibrary.org/obo/NCBITaxon_10298> Human alphaherpesvirus 1
        <http://purl.obolibrary.org/obo/NCBITaxon_37124> Chikungunya virus
        <http://purl.obolibrary.org/obo/NCBITaxon_452646> Neovison vison
        <http://purl.obolibrary.org/obo/NCBITaxon_4896> Schizosaccharomyces pombe
        <http://purl.obolibrary.org/obo/NCBITaxon_90988> Pimephales promelas
        <http://purl.obolibrary.org/obo/NCBITaxon_9395> Tupaia glis
        <http://purl.obolibrary.org/obo/NCBITaxon_9462> Galago
        <http://purl.obolibrary.org/obo/NCBITaxon_9483> Callithrix jacchus
        <http://purl.obolibrary.org/obo/NCBITaxon_9541> Macaca fascicularis
        <http://purl.obolibrary.org/obo/NCBITaxon_9544> Macaca mulatta
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002009
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000211
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002848
    terms removed: 12
        <http://purl.obolibrary.org/obo/DOID_0050758> metabolic acidosis
        <http://purl.obolibrary.org/obo/DOID_0050827> rheumatic heart disease
        <http://purl.obolibrary.org/obo/DOID_0050871> fibroma
        <http://purl.obolibrary.org/obo/DOID_0050913> large intestine adenocarcinoma
        <http://purl.obolibrary.org/obo/DOID_10986> discitis
        <http://purl.obolibrary.org/obo/DOID_1222> cartilage disease
        <http://purl.obolibrary.org/obo/DOID_13357> chondromalacia patellae
        <http://purl.obolibrary.org/obo/DOID_14021> Tietze's syndrome
        <http://purl.obolibrary.org/obo/DOID_2556> relapsing polychondritis
        <http://purl.obolibrary.org/obo/DOID_2557> chondromalacia
        <http://purl.obolibrary.org/obo/DOID_3650> lactic acidosis
        <http://purl.obolibrary.org/obo/DOID_6227> articular cartilage disease
    terms added: 31
        <http://purl.obolibrary.org/obo/DOID_0060307> autosomal dominant non-syndromic intellectual disability
        <http://purl.obolibrary.org/obo/DOID_0060502> gastrointestinal allergy
        <http://purl.obolibrary.org/obo/DOID_0060564> spinal disease
        <http://purl.obolibrary.org/obo/DOID_0060655> autosomal recessive congenital ichthyosis
        <http://purl.obolibrary.org/obo/DOID_0070309> absence epilepsy
        <http://purl.obolibrary.org/obo/DOID_0070313> thiamine deficiency disease
        <http://purl.obolibrary.org/obo/DOID_0080009> X-linked dominant disease
        <http://purl.obolibrary.org/obo/DOID_0080012> X-linked recessive disease
        <http://purl.obolibrary.org/obo/DOID_0080126> mitochondrial DNA depletion syndrome 7
        <http://purl.obolibrary.org/obo/DOID_0080217> lysosomal and lipase deficiency
        <http://purl.obolibrary.org/obo/DOID_0080320> peripheral nervous system benign neoplasm
        <http://purl.obolibrary.org/obo/DOID_0080321> autonomic nervous system benign neoplasm
        <http://purl.obolibrary.org/obo/DOID_0080322> polycystic kidney disease
        <http://purl.obolibrary.org/obo/DOID_0080355> hepatobiliary system cancer
        <http://purl.obolibrary.org/obo/DOID_0080364> malignant adenoma
        <http://purl.obolibrary.org/obo/DOID_0080373> epididymis disease
        <http://purl.obolibrary.org/obo/DOID_0080377> peroxisomal biogenesis disorder
        <http://purl.obolibrary.org/obo/DOID_0080422> Dravet syndrome
        <http://purl.obolibrary.org/obo/DOID_0080488> mucolipidosis
        <http://purl.obolibrary.org/obo/DOID_0110731> neuronal ceroid lipofuscinosis 3
        <http://purl.obolibrary.org/obo/DOID_1697> ichthyosis
        <http://purl.obolibrary.org/obo/DOID_2121> ectodermal dysplasia
        <http://purl.obolibrary.org/obo/DOID_60000> appendix disease
        <http://purl.obolibrary.org/obo/DOID_60001> pulmonary artery disease
        <http://purl.obolibrary.org/obo/DOID_60004> malignant cystadenoma
        <http://purl.obolibrary.org/obo/DOID_60006> benign vascular tumor
        <http://purl.obolibrary.org/obo/DOID_60007> cerebrovascular benign neoplasm
        <http://purl.obolibrary.org/obo/DOID_60008> parathyroid gland benign neoplasm
        <http://purl.obolibrary.org/obo/DOID_60009> pituitary gland benign neoplasm
        <http://purl.obolibrary.org/obo/DOID_9024> intestine carcinoma in situ
        <http://purl.obolibrary.org/obo/DOID_9108> uterus carcinoma in situ
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000196
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000208
    terms removed: 0
    terms added: 8
        <http://www.bioassayontology.org/bao#BAO_0000363> fluorescence intensity
        <http://www.bioassayontology.org/bao#BAO_0080027> protein level
        <http://www.bioassayontology.org/bao#BAO_0080028> quantified endpoint
        <http://www.bioassayontology.org/bao#BAO_0080029> quantified entity
        <http://www.bioassayontology.org/bao#BAO_0080030> metabaloid profile
        <http://www.bioassayontology.org/bao#BAO_0080031> Cell Painting Profile
        <http://www.bioassayontology.org/bao#BAO_0080032> epigenetic profile
        <http://www.bioassayontology.org/bao#BAO_0080033> cell profile
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000210
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002867
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002663
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000207
    terms removed: 1
        <http://www.bioassayontology.org/bao#BAO_0000363> fluorescence intensity
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002865
    terms removed: 0
    terms added: 4
        <http://www.bioassayontology.org/bao#BAO_0150092> Velos-MS
        <http://www.bioassayontology.org/bao#BAO_0150093> NGS Instrument
        <http://www.bioassayontology.org/bao#BAO_0150094> Odyssey Plate Reader
        <http://www.bioassayontology.org/bao#BAO_0150095> Luminex 200 Flow Cytometer
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000185
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAX_0000012
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAX_0000011
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0003107
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002852
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0000539
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAX_0000015
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002874
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAX_0000016
    terms removed: 0
    terms added: 0
Schema [http://www.bioassayontology.org/bas#], propURI: http://www.bioassayontology.org/bao#BAO_0002916
    terms removed: 0
    terms added: 0