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cdienem / StarTool

The Swiss Army Knife for Editing Relion .STAR Files
MIT License
19 stars 7 forks source link

--star_replace error #2

Open domgutier opened 6 years ago

domgutier commented 6 years ago

Hello Chris, I tried to use the script but get the error below. This problem only happens with --replace_star as --replace works fine:

[tiltall]$ python startool.py particles.star --replace_star _rlnDefocusU=all_local.star:_rlnMicrographName,_rlnCoordinateX[1],_rlnCoordinateY[1] --writef test.star

StarTool 1.3 (by Chris)

Starting StarTool in memory

Loading particles.star... Percent: [####################] 100.0% Done... Percent: [####################] 100.0% Done...

Only one input table read, using particlesdata

EXECUTE: --replace_star _rlnDefocusU=all_local.star:_rlnMicrographName,_rlnCoordinateX[1],_rlnCoordinateY[1] Percent: [####################] 100.0% Done... Percent: [####################] 100.0% Done... Traceback (most recent call last): File "startool.py", line 357, in stardb.star2db(file) File "/path/tiltall/STlib.py", line 117, in star2db self.makeTable(starfilename, name, labels, tuple(data)) File "/path/tiltall/STlib.py", line 172, in makeTable labels[i] += " "+self.getType(field) IndexError: list index out of range

GavinR1 commented 3 years ago

Hi,

Were you able to solve this issue? I'm running into the exact same problem, want to replace the values for a column with those from a separate star file and getting index out of range.