cdienem
commented
6 years ago Current version works (for me). Can you try to pull the latest version? Should be 1.3.
Open sjweaver opened 6 years ago
cdienem
commented
6 years ago Current version works (for me). Can you try to pull the latest version? Should be 1.3.
My intention was to shift the particles by 49 pixels to recenter some drifting class averages. I've tried a few variants of the --math flag without success. Any ideas? Thanks for sharing your script and for any advice.
python /location/_git/StarTool/startool.py job217_particles.star --math _rlnCoordinateX=_rlnCoordinateX+49 --write_selection job217_particles_add49x.star usage: startool [-h] [--info [INFO]] [--show [SHOW]] [--use USE] [--select SELECT] [--select_regex SELECT_REGEX] [--select_star SELECT_STAR] [--select_fancy SELECT_FANCY] [--release [RELEASE]] [--deselect [DESELECT]] [--sort SORT] [--tros TROS] [--subset SUBSET] [--add_col ADD_COL] [--delete_col DELETE_COL] [--rename_col RENAME_COL] [--delete_table DELETE_TABLE] [--rename_table RENAME_TABLE] [--replace REPLACE] [--replace_regex REPLACE_REGEX] [--replace_star REPLACE_STAR] [--delete [DELETE]] [--merge MERGE] [--query QUERY] [--write_selection WRITE_SELECTION] [--write WRITE] i startool: error: unrecognized arguments: --math _rlnCoordinateX=_rlnCoordinateX+49
python /location/_git/StarTool/startool.py job217_particles.star --math _rlnCoordinateX=_rlnCoordinateX + 49 --write_selection job217_particles_add49x.star usage: startool [-h] [--info [INFO]] [--show [SHOW]] [--use USE] [--select SELECT] [--select_regex SELECT_REGEX] [--select_star SELECT_STAR] [--select_fancy SELECT_FANCY] [--release [RELEASE]] [--deselect [DESELECT]] [--sort SORT] [--tros TROS] [--subset SUBSET] [--add_col ADD_COL] [--delete_col DELETE_COL] [--rename_col RENAME_COL] [--delete_table DELETE_TABLE] [--rename_table RENAME_TABLE] [--replace REPLACE] [--replace_regex REPLACE_REGEX] [--replace_star REPLACE_STAR] [--delete [DELETE]] [--merge MERGE] [--query QUERY] [--write_selection WRITE_SELECTION] [--write WRITE] i startool: error: unrecognized arguments: --math _rlnCoordinateX=_rlnCoordinateX + 49
Here I was just curious if the --math flag was working.
python /location/_git/StarTool/startool.py job217_particles.star --math _rlnCoordinateX=_rlnCoordinateX --write_selection job217_particles_add49x.star usage: startool [-h] [--info [INFO]] [--show [SHOW]] [--use USE] [--select SELECT] [--select_regex SELECT_REGEX] [--select_star SELECT_STAR] [--select_fancy SELECT_FANCY] [--release [RELEASE]] [--deselect [DESELECT]] [--sort SORT] [--tros TROS] [--subset SUBSET] [--add_col ADD_COL] [--delete_col DELETE_COL] [--rename_col RENAME_COL] [--delete_table DELETE_TABLE] [--rename_table RENAME_TABLE] [--replace REPLACE] [--replace_regex REPLACE_REGEX] [--replace_star REPLACE_STAR] [--delete [DELETE]] [--merge MERGE] [--query QUERY] [--write_selection WRITE_SELECTION] [--write WRITE] i startool: error: unrecognized arguments: --math _rlnCoordinateX=_rlnCoordinateX
python /location/_git/StarTool/startool.py job217_particles.star --math _rlnCoordinateX=_rlnCoordinateY --write_selection job217_particles_add49x.star usage: startool [-h] [--info [INFO]] [--show [SHOW]] [--use USE] [--select SELECT] [--select_regex SELECT_REGEX] [--select_star SELECT_STAR] [--select_fancy SELECT_FANCY] [--release [RELEASE]] [--deselect [DESELECT]] [--sort SORT] [--tros TROS] [--subset SUBSET] [--add_col ADD_COL] [--delete_col DELETE_COL] [--rename_col RENAME_COL] [--delete_table DELETE_TABLE] [--rename_table RENAME_TABLE] [--replace REPLACE] [--replace_regex REPLACE_REGEX] [--replace_star REPLACE_STAR] [--delete [DELETE]] [--merge MERGE] [--query QUERY] [--write_selection WRITE_SELECTION] [--write WRITE] i startool: error: unrecognized arguments: --math _rlnCoordinateX=_rlnCoordinateY