Loading module in fish shell prints commands to stdout

helmutcarter commented 10 months ago

Describe the bug

When I try to load a module in fish, it ostensibly print the commands it should run to stdout.

To Reproduce

Steps to reproduce the behavior:

$ modulecmd fish load python/2.7.18

Location and content of any modulerc or modulefile involved:

$ cat /home/helmut/modulefiles

Expected behavior

I expect the python2 module to be loaded. I have no issue when I do this in bash. This also happens with other module files in fish for me.

Error and debugging information

$ modulecmd fish --debug load python/2.7.18 
DEBUG CALLING /cm/local/apps/environment-modules/4.5.3//libexec/modulecmd.tcl fish --debug load python/2.7.18
DEBUG setConf: tcl_ext_lib set to '/cm/local/apps/environment-modules/4.5.3//lib/libtclenvmodules.so'
DEBUG Load Tcl extension library (/cm/local/apps/environment-modules/4.5.3//lib/libtclenvmodules.so)
DEBUG setConf: siteconfig set to '/cm/local/apps/environment-modules/4.5.3//etc/siteconfig.tcl'
DEBUG sourceSiteConfig: Source site configuration (/cm/local/apps/environment-modules/4.5.3//etc/siteconfig.tcl)
DEBUG setConf: locked_configs set to ''
DEBUG setConf: pager set to '/usr/bin/less -eFKRX'
DEBUG initPager: start pager (asked_use_pager=-, cmd='/usr/bin/less -eFKRX')
DEBUG setConf: verbosity set to 'debug'
DEBUG setConf: term_background set to 'dark'
DEBUG setConf: colors set to 'hi=1:db=2:se=2:er=91:wa=93:me=95:in=94:mp=1;94:di=94:al=96:sy=95:de=4:cm=92'
DEBUG setConf: color set to '0'
DEBUG module: cmd='load', args='python/2.7.18'
DEBUG setConf: avail_indepth set to '1'
:set -xg CPATH /home/helmut/programs/Python-2.7.18/Include:/cm/shared/apps/slurm/current/include;
set -xg LD_LIBRARY_PATH /home/helmut/programs/Python-2.7.18/Lib:/cm/shared/apps/slurm/current/lib64/slurm:/cm/shared/apps/slurm/current/lib64:/cm/local/apps/gcc/11.2.0/lib:/cm/local/apps/gcc/11.2.0/lib64:/cm/local/apps/gcc/11.2.0/lib32;
set -xg LIBRARY_PATH /home/helmut/programs/Python-2.7.18/Lib:/cm/shared/apps/slurm/current/lib64/slurm:/cm/shared/apps/slurm/current/lib64;
set -xg MANPATH /home/helmut/programs/Python-2.7.18/Misc/python.man:/cm/shared/apps/slurm/current/man:/cm/local/apps/environment-modules/4.5.3//share/man:/usr/local/share/man:/usr/share/man:/cm/local/apps/environment-modules/current/share/man:/cm/local/apps/environment-modules/current/share/man:/cm/local/apps/environment-modules/current/share/man;
set -xg _LMFILES_ /cm/local/modulefiles/gcc/11.2.0:/cm/local/modulefiles/slurm/water/21.08.8:/home/helmut/modulefiles/python/2.7.18;
set -xg LOADEDMODULES gcc/11.2.0:slurm/water/21.08.8:python/2.7.18;
set -xg LIBRARY_PATH_modshare /cm/shared/apps/slurm/current/lib64:1:/home/helmut/programs/Python-2.7.18/Lib:1:/cm/shared/apps/slurm/current/lib64/slurm:1;
set -xg MANPATH_modshare /usr/local/share/man:1:/cm/local/apps/environment-modules/4.5.3//share/man:1:/cm/local/apps/environment-modules/current/share/man:1:/home/helmut/programs/Python-2.7.18/Misc/python.man:1:/usr/share/man:1:/cm/shared/apps/slurm/current/man:1;
set -xg CPATH_modshare /home/helmut/programs/Python-2.7.18/Include:1:/cm/shared/apps/slurm/current/include:1;
set -xg LD_LIBRARY_PATH_modshare /cm/shared/apps/slurm/current/lib64:1:/cm/local/apps/gcc/11.2.0/lib:1:/home/helmut/programs/Python-2.7.18/Lib:1:/cm/shared/apps/slurm/current/lib64/slurm:1:/cm/local/apps/gcc/11.2.0/lib32:1:/cm/local/apps/gcc/11.2.0/lib64:1;
set -xg _LMFILES__modshare /home/helmut/modulefiles/python/2.7.18:1:/cm/local/modulefiles/gcc/11.2.0:1:/cm/local/modulefiles/slurm/water/21.08.8:1;
set -xg LOADEDMODULES_modshare gcc/11.2.0:1:python/2.7.18:1:slurm/water/21.08.8:1;
set -xg PATH /home/helmut/programs/Python-2.7.18 /home/helmut/.local/bin /cm/local/apps/environment-modules/4.5.3/bin /home/helmut/.vscode-server/bin/6c3e3dba23e8fadc360aed75ce363ba185c49794/bin/remote-cli /cm/local/apps/environment-modules/4.5.3/bin /home/helmut/programs/anaconda3/bin /home/helmut/programs/anaconda3/condabin /home/helmut/.cargo/bin /cm/shared/apps/slurm/current/sbin /cm/shared/apps/slurm/current/bin /cm/local/apps/gcc/11.2.0/bin /home/helmut/bin /cm/local/apps/environment-modules/4.5.3/bin /usr/local/bin /usr/bin /usr/local/sbin /usr/sbin /sbin /usr/sbin /cm/local/apps/environment-modules/4.5.3/bin;
set -xg PATH_modshare /usr/bin:1:/usr/local/bin:1:/cm/shared/apps/slurm/current/bin:1:/home/helmut/.local/bin:1:/home/helmut/programs/anaconda3/bin:1:/home/helmut/.cargo/bin:1:/cm/shared/apps/slurm/current/sbin:1:/cm/local/apps/gcc/11.2.0/bin:1:/sbin:1:/home/helmut/programs/Python-2.7.18:1:/usr/sbin:1:/home/helmut/programs/anaconda3/condabin:1:/home/helmut/.vscode-server/bin/6c3e3dba23e8fadc360aed75ce363ba185c49794/bin/remote-cli:1:/cm/local/apps/environment-modules/4.5.3/bin:1:/home/helmut/bin:1:/usr/local/sbin:1;
test 0;

Modules version and configuration

$ modulecmd fish --version
Modules Release 4.5.3 (2020-08-31)
$ modulecmd fish config --dump-state
Modules Release 4.5.3 (2020-08-31)

- Config. name ---------.- Value (set by if default overridden) ---------------
advanced_version_spec     0
auto_handling             0
avail_indepth             1
avail_report_dir_sym      1
avail_report_mfile_sym    1
collection_pin_version    0
collection_target         <undef>
color                     never
colors                    hi=1:db=2:se=2:er=91:wa=93:me=95:in=94:mp=1;94:di=94:al=96:sy=95:de=4:cm=92
contact                   root@localhost
extended_default          0

Additional context

None. Thank you!

xdelaruelle commented 10 months ago

Hello Helmut,

What you observe is the expected behavior of modulecmd command.

Modules tool is based on two components:

a modulecmd script that evaluates modulefiles and output their environment change settings on stdout
a module shell function that takes modulecmd output and evaluates it in the current shell session to update it

So you need to use the module shell function from your shell session, not the modulecmd script.

There is a fish initialization script provided with Modules that defines the module shell function. Given the information you provided, you should find this script at /cm/local/apps/environment-modules/4.5.3/init/fish.

$ source /cm/local/apps/environment-modules/4.5.3/init/fish

Regards, Xavier

helmutcarter commented 9 months ago

Hello Xavier,

Thank you for clearing that up. For some reason my fish shell had been set to automatically expand 'module' into 'modulecmd fish', so I assumed modulecmd was what I should be using.

Warmly, Helmut

cea-hpc / modules