Unassigned columns with mass.csv.file leads to confusion

ceabiodb / biodb

An R package framework for accessing biological and chemical databases and developing or extending new connectors.

GNU Affero General Public License v3.0

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Closed pkrog closed 3 years ago

pkrog commented 3 years ago

If some columns (like rt or mz) are defined in the TSV file, and are not recognized automatically by biodb, then they are silently ignored.

[x] Display a CAUTION/WARNING message about each unassigned fields.
[x] Allow to ignore unassigned fields to avoid warning messages.
[x] Implement a method that lists the correspondence between biodb fields and TSV columns, and list assigned TSV columns (or another method).