issues
search
ceabiodb
/
biodb
An R package framework for accessing biological and chemical databases and developing or extending new connectors.
GNU Affero General Public License v3.0
11
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Move Chebi into a separate repos
#432
pkrog
closed
4 years ago
1
Move files into cache
#431
pkrog
closed
4 years ago
0
Clean some vignettes
#430
pkrog
closed
4 years ago
0
Vignette: how to delete cache files
#429
pkrog
closed
3 years ago
0
How to implement compound database connector
#428
pkrog
closed
3 years ago
0
Load other pkg def
#427
pkrog
closed
4 years ago
0
Move documentation in package.R into vignettes
#426
pkrog
closed
3 years ago
1
More examples
#425
pkrog
closed
5 years ago
0
Split package
#423
pkrog
closed
5 years ago
0
Export test framework
#422
pkrog
closed
5 years ago
0
Make test.msmsSearch.self.match() generic
#421
pkrog
opened
5 years ago
0
One cache subfolder per cacheid
#420
pkrog
closed
5 years ago
0
Correct content URL in Expasy.
#419
pkrog
closed
5 years ago
0
Add kegg anotations
#418
pkrog
closed
5 years ago
0
Make the field `peaks` virtual
#417
pkrog
closed
4 years ago
1
Look at BiocFileCache
#416
pkrog
closed
3 years ago
1
Test keggpathway extractshapes
#415
pkrog
closed
5 years ago
0
Compounds are no more highlighted on KEGG pathway map images
#414
pkrog
closed
5 years ago
0
Db disabling
#413
pkrog
closed
5 years ago
0
remove "Online Test" column in README since tests are now run offline in Travis-CI.
#411
pkrog
closed
5 years ago
1
Add a "disabled" or "off" flag in databases info and set it to TRUE for Massbank and Chemspider.
#409
pkrog
closed
5 years ago
2
Examples for all classes
#408
pkrog
closed
5 years ago
0
Turn vignettes into Bioconductor style vignettes.
#407
pkrog
closed
4 years ago
1
Doc clean
#406
pkrog
closed
5 years ago
0
Write vignette for Biodb::addColsToDataframe()
#404
pkrog
opened
5 years ago
0
Write vignette for annotateMzValues().
#402
pkrog
opened
5 years ago
0
Implement KEGG Orthology
#401
pkrog
closed
5 years ago
1
Add examples to classes
#400
pkrog
closed
5 years ago
0
Proteins in kegg
#399
pkrog
closed
5 years ago
0
Submit to Bioconductor
#392
pkrog
closed
3 years ago
3
Disable remote db tests by default
#391
pkrog
closed
5 years ago
0
Deprecated BiodbCache::deleteFile() and merge it into BiodbCache::deleteFiles().
#390
pkrog
opened
5 years ago
0
Clean documentation of classes and methods.
#389
pkrog
closed
5 years ago
1
Resolve make check failure on Travis
#388
pkrog
closed
5 years ago
0
Implement CompoundCsvFileConn
#387
pkrog
closed
4 years ago
1
Mz match with compound dbs
#386
pkrog
closed
5 years ago
0
Collapse annotations into one single column
#385
pkrog
opened
5 years ago
1
What happens when asking for unexisting fields in `BiodbCompoundbConn::annotateMzValues()`?
#384
pkrog
closed
5 years ago
0
Generalize `BiodbMassdbConn::collapseResultsDataFrame()`
#383
pkrog
closed
5 years ago
0
Write a global method to annotate with several databases at once
#382
pkrog
opened
5 years ago
1
Bioc compat2
#380
pkrog
closed
5 years ago
0
Cache non-remote requests
#379
pkrog
opened
5 years ago
0
Nci cactus
#378
pkrog
closed
5 years ago
0
UTF-8
#377
ethevenot
opened
5 years ago
0
M/Z & mass matching with compound databases
#376
pkrog
closed
5 years ago
0
Import getEntry() vignette
#375
pkrog
opened
5 years ago
0
Add final info message in getEntry()
#374
pkrog
opened
5 years ago
0
Implement connector to CACTUS
#373
pkrog
closed
4 years ago
1
Add a progress msg for CAS conversion.
#372
pkrog
closed
5 years ago
0
Casids conversion
#371
pkrog
closed
5 years ago
0
Previous
Next