Importing the 100,000+ entry files in BiocFileCache by moving them one by one is too slow (bfcadd() accepts only one file path).
Try using action="asis" option, which lets the file at its original location.
However, the issue may be the editing of BiocFileCache SQLite file. Thus the solution would be to modify BiocFileCache to accept a character vector of file paths.
Importing the 100,000+ entry files in BiocFileCache by moving them one by one is too slow (
bfcadd()accepts only one file path). Try usingaction="asis"option, which lets the file at its original location. However, the issue may be the editing of BiocFileCache SQLite file. Thus the solution would be to modify BiocFileCache to accept a character vector of file paths.