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celiaccb / Software-Development-Group-Project-2020

JACKY, a friendly tool for human kinase, phosphosites and kinase inhibitors information
http://jacky-03.ehym3crjpy.eu-west-2.elasticbeanstalk.com
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Website URL #53

Closed celiaccb closed 4 years ago

celiaccb commented 4 years ago

I am just posting the URL of the website so it is easily accessible for everyone:

EDIT: USE http://jacky-03.ehym3crjpy.eu-west-2.elasticbeanstalk.com/

OLD URL: http://jacky-env-02.ehym3crjpy.eu-west-2.elasticbeanstalk.com

AnnaDearman commented 4 years ago

I know we still have changes to make, but FYI I've just deployed the latest version (jacky-47). I also made a pull request earlier. The application.py script has changed I made yesterday so please use the version in my fork (or merge the pull request and use the master fork) if you want to make any changes to it!

Correction: I am trying to deploy it, but it is taking a while...

AnnaDearman commented 4 years ago

The deployment failed. I will investigate!

AnnaDearman commented 4 years ago

It seems to have fixed itself...? 😄

AnnaDearman commented 4 years ago

Apologies, it is still having problems. Whenever it seems to be working, I try to run an error log to see what happened, and it starts updating its environment again by itself.

AnnaDearman commented 4 years ago

Sorry, guys, there's a new URL: http://jacky-03.ehym3crjpy.eu-west-2.elasticbeanstalk.com/

The second environment went bad again. Not sure why because I uploaded the same new zip file to the new environment and it worked OK.

AnnaDearman commented 4 years ago

Hi all, I've deployed the latest version of jacky at http://jacky-03.ehym3crjpy.eu-west-2.elasticbeanstalk.com/ with clickable logo, latest database, ability to process five-column file, etc. @East-YutangChen please send me your new code for handling the multi-inhibitor file, so I can incorporate it into the script... if I get stuck I'll ask @celiaccb for help! 😄 Anna

AnnaDearman commented 4 years ago

Latest version is up!

AnnaDearman commented 4 years ago

Hi all, I've just deployed the latest version with Katie's database from this evening and some changes to the stat analysis. It looks like I've broken it because you can't download the tables and plots at the moment (I suppose I have broken it...) but they are being created, one per inhibitor, now. It's just that the links are broken! Hopefully this will get fixed by tomorrow and we will be able to handle all the file types in full!

AnnaDearman commented 4 years ago

We also need to update the counts on the homepage as there are more rows in the tables now (the extra phosphosites are missing their substrate gene name, but they will have the UniProt ID). I believe there are new templates on their way, including the phosphositespage one with links to the UniProt page for the accession ID

East-YutangChen commented 4 years ago

Thanks for your hard work, Anna! Well done!

在 2020年2月9日，19:17，AnnaDearman notifications@github.com 写道：

 Hi all, I've just deployed the latest version with Katie's database from this evening and some changes to the stat analysis. It looks like I've broken it because you can't download the tables and plots at the moment (I suppose I have broken it...) but they are being created, one per inhibitor, now. It's just that the links are broken! Hopefully this will get fixed by tomorrow and we will be able to handle all the file types in full!

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AnnaDearman commented 4 years ago

Have deployed another version of JACKY which I'll test now. I've updated the counts on the homepages (templates on my fork) and have included Celia's link to the UniProt Acc ID search on the phosphosite page, plus my nearly-there datanalysis stuff (RKA tables still all being displayed at the top of the page) and the latest database.