Linkml based RDF export support added - Githubissues

cellannotation / cas-tools

Cell Annotation Schema Tools

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Linkml based RDF export support added #75

Closed hkir-dev closed 1 month ago

hkir-dev commented 1 month ago

In this version CAS json schemas are still the main schemas. This version adds support for:

cas2rdf cli
schema_automator based LinkML schema generation
decorating default linkML schema to support ontology properties and namespaces
expands schema using OAKlib for dynamic CellTypeEnums
Adds ids to the json data
dumps json data to RDF. Sample output ontology: https://github.com/cellannotation/cas-tools/blob/linkml/src/test/test_data/linkml/output_small.rdf
Creates existential restrictions for the CL term relation using SPARQL.

End to end process can run in-memory or file-based. Example can be found in the integration tests: