cellannotation / cell-annotation-schema

General, open-standard schema for cell annotations
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Update CAP_extension.json #60

Closed dosumis closed 7 months ago

dosumis commented 8 months ago

Fixes #59

dosumis commented 8 months ago

Needs test example. @mfutey - do you have some examples of categories from curation (Maybe categories are something we only expect to get from CAP?)

mfutey commented 7 months ago

@dosumis the category is the parent value for the value in the [cellannotation_setname], here is an example from a retina dataset:

cluster2--cell_fullname cluster2--cell_ontology_term_id cluster2--cell_ontology_term cluster2--category_fullname cluster2--category_cell_ontology_exists cluster2--category_cell_ontology_term_id cluster2--category_cell_ontology_term
flat midget bipolar CL:4033033 flat midget bipolar cell cone OFF True CL:0000750 OFF-bipolar cell
dosumis commented 7 months ago

Hi @mfutey - thanks for the example. I'll use it for a test. Do you have a whole sheet or anndata file that this comes from?

github-actions[bot] commented 7 months ago

Validation Passes.

github-actions[bot] commented 7 months ago

Validation Passes.