scvi - come up with a test dataset and test current code

cellarium-ai / cellarium-ml

Distributed single-cell data analysis.

BSD 3-Clause "New" or "Revised" License

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Closed sjfleming closed 7 months ago

sjfleming commented 7 months ago

Work with @fedorgrab to create a data extract from the Cellarium data repo that has just a few batches of PBMC data.

Point to those extracted h5ad files in the scvi config file.

Run our scvi from the modified_scvi branch.

Post the results here. Is it currently working?

ImXman commented 7 months ago

test data UMAP colored by batch

UMAP colored by cell type