search

cellarium-ai / cellarium-ml

Distributed single-cell data analysis.
BSD 3-Clause "New" or "Revised" License
13 stars 3 forks source link

Parser key "data.batch_keys" error #193

Open fedorgrab opened 4 months ago

fedorgrab commented 4 months ago

Error log output:

error: Parser key "data.batch_keys":
  Does not validate against any of the Union subtypes
  Subtypes: (dict[str, cellarium.ml.utilities.data.AnnDataField], <class 'NoneType'>)
  Errors:
    - Validation failed: Key "attr" is required but not included in config object or its value is None.
    - Expected a <class 'NoneType'>
  Given value type: <class 'dict'>
  Given value: {'x_ng': Namespace(attr='X', convert_fn=<function densify at 0x7f031c69eb90>), 'var_names_g': Namespace(attr='var_names'), 'y_n': Namespace(attr='obs', key='cell_type', convert_fn=<function categories_to_codes at 0x7f031c69ec20>), 'total_mrna_umis_n': Namespace(attr='obs', key='total_mrna_umis')}