many observations are missing complete metadata.json files from ffq

[sbooeshaghi]

This results in a few observations.json files that have missing links to raw data. I will update this issue with accessions as i find them.

Here are examples that need to have updated metadata.json and observation.json

./GSM3738536 ./GSM4213833 ./GSM4213834 ./GSM4213835 ./GSM4213836

To fix this: run

ffq -o metadata.json GSM3738536

and manually update the observation.json file to include all of the data links (accessions/fastq/bam) for that observation.

[sbooeshaghi]

The observations look as if they contain all of the relevant links- I just need to remove the "empty" links by running

jq ".links |= map(select(.url != null and .url != \"\"))" observation.json > tmp && mv tmp observation.json

[sbooeshaghi]

fixed.