`enabled` option of cramToFastq doesn't work as expected

cellgeni / nf-irods-to-fastq

Get CRAMs from iRODS and convert them to FASTQ

MIT License

1 stars 2 forks source link

`enabled` option of cramToFastq doesn't work as expected #2

Closed cakirb closed 1 month ago

cakirb commented 4 months ago

I've tried to modify enabled part as "${params.publish_fastqs} && ${!params.for_upload} == true" on my side, but it doesn't fix the issue even the expression should return true

prete commented 2 months ago

Part of this was sorted at: 7585d718136816d57db946bca5446be893cce3bf Now you can have the functionality expressing both publish and merge with:

nextflow run main.nf \
        --meta samples.csv \
        --publish_fastqs \
        --merge \
        -resume

Haven't tested automatic upload yet.