ERROR IN sceasy instructions, loompy part

cellgeni / sceasy

A package to help convert different single-cell data formats to each other

GNU General Public License v3.0

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ERROR IN sceasy instructions, loompy part #13

Closed levinhein closed 3 years ago

levinhein commented 3 years ago

Hi. I can't get the sceasy package right. I installed loompy successfully in terminal, and yet when I run the code below, I get stuck at the loompy part, saying that there's no loompy. Please advise. Thank you!

> library(sceasy)
Loading required package: reticulate
> library(reticulate)
> use_condaenv('scgen_env')
> loompy <- reticulate::import('loompy')
Error in py_module_import(module, convert = convert) : 
  ModuleNotFoundError: No module named 'loompy'

abs51295 commented 3 years ago

Follow this comment: https://github.com/cellgeni/sceasy/issues/4#issuecomment-673577649