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cellgeni / sceasy

A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
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Size limit of Seurat object to convert to Anndata #15

Closed levinhein closed 3 years ago

levinhein commented 3 years ago

Hello! Does sceasy have size limit for converting Seurat objects to Anndata format?

When I convert a 8GB Seurat object it was successful and quick. But when I try to process 10GB Seurat object, it processes for a long time (~20minutes) and always crashes my R/Rstudio run, which I tried many times. Thank you!

nh3 commented 3 years ago

sceasy itself has no size limit. The difference you see might have something to do your object or computation environment.