Closed levinhein closed 3 years ago
Hi. Do you have any idea why this doesn't work?
> library(sceasy) Loading required package: reticulate > library(reticulate) > use_condaenv(condaenv = "scgen-env", required = TRUE) > loompy <- reticulate::import('loompy') > #Seurat to SingleCellExperiment > sceasy::convertFormat(TC.combinedFINAL, from="seurat", to="sce", + outFile='TC.combinedFINALsce.rds') Error: Unsupported conversion from "seurat" to "sce"
This function requires R package Seurat (it basically calls the function Seurat::as.SingleCellExperiment()). Have you checked if it's installed in the same environment as sceasy?
Seurat
Seurat::as.SingleCellExperiment()
sceasy
Hi. Do you have any idea why this doesn't work?