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cellgeni / sceasy

A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
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Is it possible to view the sequence of a specific gene from any Seurat function? #18

Closed levinhein closed 3 years ago

levinhein commented 3 years ago

Hello. I have a full-length scRNA-seq data smart-seq2 and I was wondering if it is possible to view the 5' to 3' actual sequence of any specific gene? Thank you.

nh3 commented 3 years ago

You'd have to look into the BAM file which contains the actual aligned reads in your region of interest.