error converting loom to sce

cellgeni / sceasy

A package to help convert different single-cell data formats to each other

GNU General Public License v3.0

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error converting loom to sce #24

Closed akhst7 closed 3 years ago

akhst7 commented 3 years ago

Hi,

When converting a loom file to sce as follows, I got the following error.

> convertFormat("skin.loom", from = "loom", to = "sce", outFile = "skin.rds" )
Error in readExchangeableLoom(inFile, backed = FALSE, main_layer_name = main_layer_name,  : 
  file.exists(filename) is not TRUE

Any help will be appreciated.

nh3 commented 3 years ago

Given the error message, it seems "skin.loom" doesn't exist in your working directory.

nh3 commented 3 years ago

Closing for now. Please re-open if it's not related to file existence.

Vinayaksiv-17 commented 3 years ago

I have the same issue. But it is not related to file existence.

akhst7 commented 3 years ago

@Vinayaksiv-17, post the error message.

Vinayaksiv-17 commented 3 years ago

I solved it. It was a typo