Closed inodb closed 3 years ago
On OSX it took a bit of trial & error to get the environment of sceasy working.
I used mamba over conda because it is faster, but should result in the same env:
mamba create -n sceasy r-sceasy python=3
Some deps were not installed properly, so had to reinstall openblas and r-stringi:
openblas
r-stringi
conda install anndata==0.6.19 -c bioconda mamba install -c conda-forge openblas mamba remove r-stringi mamba install r-stringi r-sceasy
Then there is some funkiness with anndata not working with the scipy env:
pip install scipy==1.2.1
After that things worked fine. Maybe adding some of these notes to the README could be helpful. That being said: compared to most bioinf tools this was pretty easy to install, so kudos 👏
Many thanks for your suggestion! Readme updated.
On OSX it took a bit of trial & error to get the environment of sceasy working.
I used mamba over conda because it is faster, but should result in the same env:
Some deps were not installed properly, so had to reinstall
openblas
andr-stringi
:Then there is some funkiness with anndata not working with the scipy env:
After that things worked fine. Maybe adding some of these notes to the README could be helpful. That being said: compared to most bioinf tools this was pretty easy to install, so kudos 👏