search

cellgeni / sceasy

A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
363 stars 53 forks source link

Error in seurat to Anndata conversion #33

Open HaikuoLi opened 3 years ago

HaikuoLi commented 3 years ago

Hello!

I got this error when trying to convert seurat to Anndata. Any thoughts?

sceasy::convertFormat('XXX.rds', from="seurat", to="anndata", outFile='XXX.h5ad')

Error in compareVersion(as.character(obj@version), "3.0.0") : trying to get slot "version" from an object of a basic class ("character") with no slots

Thank you in advance!

robinweide commented 3 years ago

I have the same issue.

rgranit commented 3 years ago

+1

fentouxungui commented 2 years ago 
# read in seurat object: cds
cds <- readRDS("Path-to-Your-Rds.rds")
sceasy::convertFormat(cds, from="seurat", to="anndata",
outFile='XXX.h5ad')
WhatMelonGua commented 1 month ago 
# read in seurat object: cds
cds <- readRDS("Path-to-Your-Rds.rds")
sceasy::convertFormat(cds, from="seurat", to="anndata",
outFile='XXX.h5ad')

Really Thank You, that's helpful. While I use a path string as input