Open AAA-3 opened 2 years ago
@AAA-3 if you're installing it using R, you need to install the python required packages manually. From the terminal do:
conda create -n EnvironmentName python=3.6 anndata==0.6.19 scipy==1.2.1 loompy -c bioconda --yes
that should fix all your ModuleNotFoundError
I have run the following code on R with the following errors::
Error in py_module_import(module, convert = convert) : ModuleNotFoundError: No module named 'loompy'
Detailed traceback: File "/home/ali/R/x86_64-pc-linux-gnu-library/4.0/reticulate/python/rpytools/loader.py", line 44, in _import_hook level=level
sceasy::convertFormat(NueE18.5_noWT2, from="seurat", to="anndata",outFile='NueE18.5_noWT2.h5ad'
Error in py_module_import(module, convert = convert) : ModuleNotFoundError: No module named 'anndata'Detailed traceback: File "/home/ali/R/x86_64-pc-linux-gnu-library/4.0/reticulate/python/rpytools/loader.py", line 44, in _import_hook level=level
Am I missing something?