Open LTLA opened 4 years ago
Very good idea @LTLA ! We are working on it.
Excellent. When you get closer to submission, I would be happy to make a PR to move the SCE <-> monocle2 conversion code from scran into your package. (It may also be worth reaching out to @hpliner to see what data structure monocle3 ultimately decided to use.)
Come to think of it, I'll even throw in the SCE <-> edgeR's DGEList
and DESeq2's DESeqDataSet
if you want - basically everything in scran::convertTo
, all for the low, low price of nothing.
I would be very interested in seeing this package submitted to Bioconductor. Are there any plans for this? For starters, I would be very pleased to be able to excise the monocle conversion code out of scran if I had a central "conversion hub" package that I could move that code to.
Depending on basilisk's progress, you may even be able to alleviate your SystemRequirements.