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cellgeni / sceasy

A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
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When encountering a NumPy-related error while using a conversion function on an Seurat object #91

Open liuzhuoliang123 opened 2 weeks ago

liuzhuoliang123 commented 2 weeks ago

When I use the convertFormat function to convert a Seurat object, I encountered the following error. How can I resolve it? The version of Seurat is 5.0, and the current conda environment has a numpy version of 2.0.0.

adata <- convertFormat(sc.sub,

  • from="seurat",
  • to="anndata",
  • main_layer="counts",
  • drop_single_values=FALSE) Error: Required version of NumPy not available: incompatible NumPy binary version 33554432 (expecting version 16777225)
RunzheWang commented 5 days ago

I encounter the same issue, do you find the solution?