Open pandaqiuqiu opened 3 weeks ago
when I converted h5ad file to seurat, it encountered an error like this:
sceasy::convertFormat(h5ad_file, from="anndata", to="seurat",
Error in py_call_impl(callable, call_args$unnamed, call_args$named) : anndata._io.utils.AnnDataReadError: Above error raised while reading key '/layers' of type <class 'h5py._hl.group.Group'> from /. Run reticulate::py_last_error() for details.
reticulate::py_last_error()
And versions of packages as following:
anndata 0.7.1 h5py 2.9.0 loompy 2.0.16 numpy 1.21.5 pandas 1.3.3 python 3.7.13 scipy 1.2.1
Do you have any suggestions to help me fix this? Thanks
when I converted h5ad file to seurat, it encountered an error like this:
sceasy::convertFormat(h5ad_file, from="anndata", to="seurat",
Error in py_call_impl(callable, call_args$unnamed, call_args$named) : anndata._io.utils.AnnDataReadError: Above error raised while reading key '/layers' of type <class 'h5py._hl.group.Group'> from /. Run
reticulate::py_last_error()for details.And versions of packages as following:
anndata 0.7.1 h5py 2.9.0 loompy 2.0.16 numpy 1.21.5 pandas 1.3.3 python 3.7.13 scipy 1.2.1
Do you have any suggestions to help me fix this? Thanks