search

cellgeometry / heteromotility

Quantitative analysis of cell motility behaviors
12 stars 7 forks source link

TypeError: acf() got an unexpected keyword argument 'unbiased' #4

Open GermanCamargoOrtega opened 4 months ago

GermanCamargoOrtega commented 4 months ago

Hi guys, I hope this email finds you well. I am trying to run the software with the demo data and get an error regarding the acf() function. Please find attached the log below. Could you please let me know what is going on here? Many thanks in advance and best wishes.

(heteromotility_env) PS E:\GC\heteromotility\demo> heteromotility \demo\results --tracksX rw_x.csv --tracksY rw_y.csv --output_suffix results Tracking rw_x.csv Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\ProgramData\Anaconda3\envs\heteromotility_env\Scripts\heteromotility.exe__main__.py", line 7, in File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\site-packages\heteromotility\command_line.py", line 4, in cli heteromotility.main() File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\site-packages\heteromotility\heteromotility.py", line 127, in main rwf = RWFeatures(cp.cell_ids, gf) File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\site-packages\heteromotility\hmstats.py", line 706, in init self.autocorr, self.qstats, self.pvals = self.autocorr_all(cell_ids, max_tau = self.autocorr_max_tau) File "C:\ProgramData\Anaconda3\envs\heteromotility_env\lib\site-packages\heteromotility\hmstats.py", line 1145, in autocorr_all ac, q, p = acf(X, unbiased = True, nlags = (max_tau+1), qstat=True) TypeError: acf() got an unexpected keyword argument 'unbiased'