version model missing. cannot install

[kaye11]

Hi, I am running to this error whenever I try to install:

(cellmodeller) C:\Users\User\CellModeller>pip install -e . Obtaining file:///C:/Users/User/CellModeller ERROR: Command errored out with exit status 1: command: 'C:\Users\User\anaconda3\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\User\CellModeller\setup.py'"'"'; file='"'"'C:\Users\User\CellModeller\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\User\AppData\Local\Temp\pip-pip-egg-info-901o1_bo' cwd: C:\Users\User\CellModeller\ Complete output (20 lines): Traceback (most recent call last): File "C:\Users\User\CellModeller\setup.py", line 14, in version_git = subprocess.check_output(["git", "describe"]).rstrip() File "C:\Users\User\anaconda3\lib\subprocess.py", line 415, in check_output return run(popenargs, stdout=PIPE, timeout=timeout, check=True, File "C:\Users\User\anaconda3\lib\subprocess.py", line 493, in run with Popen(popenargs, **kwargs) as process: File "C:\Users\User\anaconda3\lib\subprocess.py", line 858, in init self._execute_child(args, executable, preexec_fn, close_fds, File "C:\Users\User\anaconda3\lib\subprocess.py", line 1311, in _execute_child hp, ht, pid, tid = _winapi.CreateProcess(executable, args, FileNotFoundError: [WinError 2] The system cannot find the file specified

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "C:\Users\User\CellModeller\setup.py", line 16, in <module>
    with open(version_py, 'r') as fh:
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\User\\CellModeller\\CellModeller/version.py'
----------------------------------------

WARNING: Discarding file:///C:/Users/User/CellModeller. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.`

It seems like version.py is missing from the directory (correct me if I am wrong!). What should I do? Thank you!

[avimanyu786]

Hi @kaye11 ,

Welcome to the forum!

Please check this Wiki for installation details. I'd prefer Linux rather than Windows or Mac for running CellModeller over Docker. But you could also make use of WSL and attempt the same, as version 2 now runs on a Linux kernel with full system call capacity.

[huang-xin-lei]

After I installed the tutorial in Wilk, I still prompted the missing version file

[WMXgg]

prompted

Did you fix the problem?

[huang-xin-lei]

是的已经解决，我是按照教程利用conda在linux平台进行安装，如果你需要在win平台安装可以参考：https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b https://blog.csdn.net/qq_33980829/article/details/121744565 如果还有其他问题可以加我qq交流：或发我邮件 Yes, it has been solved. I use CONDA to install on Linux platform according to the tutorial. If you need to install on WIN platform, you can refer to: https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b https://blog.csdn.net/qq_ 33980829/article/details/121744565 If you have other questions, you can add me to QQ communication: or send me an email