Cannot install CellModeller on Win 10

[WMXgg]

I am trying to install CellModeller on Win 10 following an online instruction: https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b While step 1-8 work nice (at least looks good), at step 9: Step 9. install CellModeller

cd CellModeller pip install -e . cd ..

I got an error:

(CelMod) C:\CellModeller>pip install -e . Obtaining file:///C:/CellModeller Preparing metadata (setup.py) ... error ERROR: Command errored out with exit status 1: command: 'C:\Users\86178\anaconda3\envs\CelMod\python.exe' -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\CellModeller\setup.py'"'"'; file='"'"'C:\CellModeller\setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\86178\AppData\Local\Temp\pip-pip-egg-info-orkdh1_p' cwd: C:\CellModeller\ Complete output (20 lines): Traceback (most recent call last): File "C:\CellModeller\setup.py", line 14, in version_git = subprocess.check_output(["git", "describe"]).rstrip() File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 415, in check_output return run(popenargs, stdout=PIPE, timeout=timeout, check=True, File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 493, in run with Popen(popenargs, **kwargs) as process: File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 858, in init self._execute_child(args, executable, preexec_fn, close_fds, File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 1311, in _execute_child hp, ht, pid, tid = _winapi.CreateProcess(executable, args, FileNotFoundError: [WinError 2] \u7cfb\u7edf\u627e\u4e0d\u5230\u6307\u5b9a\u7684\u6587\u4ef6\u3002

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "", line 1, in File "C:\CellModeller\setup.py", line 16, in with open(version_py, 'r') as fh: FileNotFoundError: [Errno 2] No such file or directory: 'C:\CellModeller\CellModeller/version.py'

WARNING: Discarding file:///C:/CellModeller. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

Is anyone know the how to fix the issue? Many thanks.

[WMXgg]

I fixed the problem. The key is to install CellModeller using Git Bash and Conda environment. I added more steps to the instructions: https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b

[guangou]

I am trying to install CellModeller on Win 10 following an online instruction: https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b While step 1-8 work nice (at least looks good), at step 9: Step 9. install CellModeller

cd CellModeller pip install -e . cd ..

I got an error:

(CelMod) C:\CellModeller>pip install -e . Obtaining file:///C:/CellModeller Preparing metadata (setup.py) ... error ERROR: Command errored out with exit status 1: command: 'C:\Users\86178\anaconda3\envs\CelMod\python.exe' -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\CellModeller\setup.py'"'"'; file='"'"'C:\CellModeller\setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\86178\AppData\Local\Temp\pip-pip-egg-info-orkdh1_p' cwd: C:\CellModeller Complete output (20 lines): Traceback (most recent call last): File "C:\CellModeller\setup.py", line 14, in version_git = subprocess.check_output(["git", "describe"]).rstrip() File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 415, in check_output return run(popenargs, stdout=PIPE, timeout=timeout, check=True, File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 493, in run with Popen(popenargs, kwargs) as process: File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 858, in init** self._execute_child(args, executable, preexec_fn, close_fds, File "C:\Users\86178\anaconda3\envs\CelMod\lib\subprocess.py", line 1311, in _execute_child hp, ht, pid, tid = _winapi.CreateProcess(executable, args, FileNotFoundError: [WinError 2] \u7cfb\u7edf\u627e\u4e0d\u5230\u6307\u5b9a\u7684\u6587\u4ef6\u3002 During handling of the above exception, another exception occurred:

Traceback (most recent call last):

File "", line 1, in File "C:\CellModeller\setup.py", line 16, in with open(version_py, 'r') as fh: FileNotFoundError: [Errno 2] No such file or directory: 'C:\CellModeller\CellModeller/version.py' WARNING: Discarding file:///C:/CellModeller. Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

Is anyone know the how to fix the issue? Many thanks.

I got the same error ,could you please tell me how did you solve it?

[WMXgg]

Follow the protocol I show here: https://gist.github.com/waterfleas/f539dd69634cd65596641ca2c6df980b

[EA-B]

I have encountered the same issue at step 11, even after installing via gitbash, "No such file or directory: ...CellModeller/version.py"