Hi,
I keep encountering an issue when I run large simulations (target being 200k cells), where suddenly the residual will explode (see log below) and after a long pause the program will fail.
I understand that the issue may arise from overlapping cells (maybe?), but I was wondering if there'd be an obvious solution to it. I've tried lowering the time step size but that doesn't seem to avoid the crashes.
Other than these cases, the program is great at running simulations! and I typically obverse good residuals, e.g.
1720 140704 cells 2624289 cts 120 iterations residual = 0.004888
System info:
I'm running the simulations on a Nvidia RTX A5000 and only using the Bacterium model (without integrator nor signalling model).
Hi, I keep encountering an issue when I run large simulations (target being 200k cells), where suddenly the residual will explode (see log below) and after a long pause the program will fail. I understand that the issue may arise from overlapping cells (maybe?), but I was wondering if there'd be an obvious solution to it. I've tried lowering the time step size but that doesn't seem to avoid the crashes.
Output:
1270 96368 cells 2232381 cts 674576 iterations residual = 40957.245665Other than these cases, the program is great at running simulations! and I typically obverse good residuals, e.g.
1720 140704 cells 2624289 cts 120 iterations residual = 0.004888System info: I'm running the simulations on a Nvidia RTX A5000 and only using the Bacterium model (without integrator nor signalling model).