count mapped versus aligned reads

centre-for-virus-research / weeSAM

Script for parsing SAM/BAM files for coverage statistics

GNU General Public License v3.0

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count mapped versus aligned reads #12

Open josephhughes opened 4 years ago

josephhughes commented 4 years ago

I think that an additional column is needed for the number of mapped reads as at the moment weeSAM is really reporting the number of alignments (secondary and supplementary) rather the the number of mapped reads. So text needs to be modified to say "Number of alignments" and additional column with the number of Mapped reads.