Procedural abundance profiles

cerebis / meta-sweeper

Parametric sweep of simulated microbial communities and metagenomic sequencing.

GNU General Public License v3.0

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Procedural abundance profiles #35

Closed cerebis closed 8 years ago

cerebis commented 8 years ago

Both WGS and HiC simulators must support procedural profiles. Currently metaART.py has support but HiC does not.

For a single model distribution, we could simply place the explicit code in each. Since it relies on Numpy, there is only a few lines of code required. In the long run, it would be better to share a single method between each.

cerebis commented 8 years ago

Abandoning file based profiles in favour of generating them.

cerebis commented 8 years ago

[x] HiC support commit: de70abe5eb1bc2f8317408dd27d59cc7d5a92854
[x] Implemented as abundance.py commit: 6aa4f47bf307671f2760da069786f4f9618cad16
[x] Refactored metaART.py commit: 922a74538682f61fc89b808e34a45344375eba7a