Validate treatment of sim3C site duplication

cerebis / meta-sweeper

Parametric sweep of simulated microbial communities and metagenomic sequencing.

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Validate treatment of sim3C site duplication #48

Closed cerebis closed 7 years ago

cerebis commented 7 years ago

Moved this issue from #6 to its own.

koadman commented 7 years ago

i'm confused about the nomenclature here: for 3C protocols we would not expect cut site duplication, while the Hi-C protocols do create it for the single-stranded overhang regions.

cerebis commented 7 years ago

Done.

I think you might be confused by the renaming of simForward to sim3C?