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cerebis / meta-sweeper

Parametric sweep of simulated microbial communities and metagenomic sequencing.
GNU General Public License v3.0
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Add documentation for satisfying beagle-lib dependency of timeseries workflow. #56

Closed cerebis closed 7 years ago

cerebis commented 7 years ago

Not all linux distributions have binary packages for the dependency beagle-lib. This can be built from Git source, but also has requirements.

These are outlined at: https://github.com/beagle-dev/beagle-lib/wiki/LinuxInstallInstructions

Importantly, GNU libtool must be installed but if missing will produce errors that do not make the missing dependency immediately obvious.

cerebis commented 7 years ago

Additionally, it may be of less complication to define LD_LIBRARY_PATH or extend it to include the location of Beagle-lib's libhmsbeagle-jni.so, rather than pass the variable java.lib.path at invocation.