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cerebis
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meta-sweeper
Parametric sweep of simulated microbial communities and metagenomic sequencing.
GNU General Public License v3.0
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Sampling from a pool of real genomes
#29
cerebis
opened
8 years ago
0
More than one ancestral genome
#28
cerebis
closed
8 years ago
2
alignmentToTruth.py requires refactoring.
#27
cerebis
closed
8 years ago
0
Conversion of YAML output to JSON
#26
cerebis
closed
7 years ago
1
nextflow fork might be better using traits
#25
cerebis
closed
7 years ago
1
Sweep parameters must be exposed in aggregation
#24
cerebis
closed
7 years ago
1
implement NMI measure
#23
cerebis
opened
8 years ago
3
Updates required on readme
#22
cerebis
closed
7 years ago
2
Revert order of config includes
#21
cerebis
closed
8 years ago
0
Consideration of code resuse outside of meta-sweeper.
#20
cerebis
closed
7 years ago
0
Rename and tidy bamToEdges_mod2.py
#19
cerebis
closed
7 years ago
1
Finding dependent binaries
#18
cerebis
closed
8 years ago
2
lofreq appears to be missing.
#17
cerebis
closed
8 years ago
2
resume fails due to FileAlreadyExistsException
#16
koadman
closed
8 years ago
5
readme.md requires update
#15
cerebis
closed
8 years ago
0
Print usage when run with no arguments
#14
koadman
closed
7 years ago
2
Move supporting groovy code out of work-flow file
#13
cerebis
closed
8 years ago
1
Add further graphical representations besides the basic contig graph.
#12
cerebis
opened
8 years ago
0
Eliminate dependency on Bedtools
#11
cerebis
closed
8 years ago
3
Workflows: add conditional HiC and 3C support
#10
cerebis
closed
7 years ago
1
Nextflow breaks on PBSPro because of script names.
#9
cerebis
closed
8 years ago
4
Nextflow fails on Altair's PBSPro
#8
cerebis
closed
8 years ago
3
Reconsider TruthTable serialized format
#7
cerebis
closed
8 years ago
1
Enhancing 3C simulation (simForward.py)
#6
cerebis
closed
7 years ago
4
Potential memory bottleneck with assembly
#5
cerebis
closed
8 years ago
1
a5_pipeline.pl dies on symbolically linked gzipped FastQ
#4
cerebis
closed
8 years ago
0
pipeline should include random 3C read pairs by default
#3
koadman
closed
8 years ago
1
Fastq and BAMs should be gzipped
#2
cerebis
closed
8 years ago
2
HiC reads not reproduced run to run despite seed.
#1
cerebis
closed
8 years ago
0
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