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cerebis / qc3C

Reference-free quality assessment for Hi-C sequencing data
GNU Affero General Public License v3.0
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qc3C depends on samtools #24

Closed cerebis closed 5 years ago

cerebis commented 5 years ago

In my efforts to speed up some initial steps, I appear to have made samtools a pre-req, overlooking that this might not be installed on a vanilla system.

  1. Add samtools to the Docker image
  2. Document this pre-req and any others.
  3. Consider fall-back if the work can be done another way.
cerebis commented 5 years ago

Added additional dependencies to docker