We got our sediment Hi-C data today so I was very excited to see if it worked. I had issues with the conda install of qc3c because of a pysam instability:
ImportError: /usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_4' not found (required by /mnt/gpfs/chris/Installed/miniconda3/envs/qc3c/lib/python3.8/site-packages/pysam/libchtslib.cpython-38-x86_64-linux-gnu.so)
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Then I tried docker which works but breaks on my reads:
docker run cerebis/qc3c mkdb --reads test_R1.fq --reads test_R2.fq --lib kmers.jf
ERROR | 2020-11-26 14:33:32,763 | main | test_R1.fq
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Which is odd as I can read them OK with other programs.
We got our sediment Hi-C data today so I was very excited to see if it worked. I had issues with the conda install of qc3c because of a pysam instability:
ImportError: /usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_4' not found (required by /mnt/gpfs/chris/Installed/miniconda3/envs/qc3c/lib/python3.8/site-packages/pysam/libchtslib.cpython-38-x86_64-linux-gnu.so) ————————
Then I tried docker which works but breaks on my reads:
docker run cerebis/qc3c mkdb --reads test_R1.fq --reads test_R2.fq --lib kmers.jf ERROR | 2020-11-26 14:33:32,763 | main | test_R1.fq
————————————
Which is odd as I can read them OK with other programs.