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cerebis / sim3C

Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
GNU General Public License v3.0
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Art.py warning level log should be debug level. #17

Closed cerebis closed 5 months ago

cerebis commented 4 years ago

This warning can safely be ignored. It pertains to how the dependent Art.py module is used by sim3C and I should really change that to be a debug statement, rather than warning.

On Sun, 19 Apr 2020 at 14:08, Sina Majidian notifications@github.com wrote:

Thanks for your reply. No, but I've found the commit on Jul 25, 2019 containing the sim3c.py. It looks working. I've mentioned the reference genome and I'm facing with a warning.

sim3C.py --dist uniform -n 500000 -l 150 -e NlaIII -m hic simHap1.fasta sim.fastq ...

WARNING | 2020-04-19 08:21:36,897 | Art | No reference supplied, calls will have to supply a template

Would you please describe the warning? I can guess sim3c doesn't complain about the reference genome. I'm wondering whether there is an option in simulation for using HindIII or MboI enzyme?

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Originally posted by @cerebis in https://github.com/cerebis/sim3C/issues/16#issuecomment-617557785